update doc
This commit is contained in:
Dario Coscia
committed by
FilippoOlivo
FilippoOlivo
parent
ae1fd2680f
commit
480140dd31
@@ -19,84 +19,84 @@ import importlib.metadata
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# -- Project information -----------------------------------------------------
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_DISTRIBUTION_METADATA = importlib.metadata.metadata('pina-mathlab')
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project = _DISTRIBUTION_METADATA['Name']
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copyright = _DISTRIBUTION_METADATA['License-File']
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author = "PINA contributors"
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version = _DISTRIBUTION_METADATA['Version']
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_DISTRIBUTION_METADATA = importlib.metadata.metadata("pina-mathlab")
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project = _DISTRIBUTION_METADATA["Name"]
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copyright = _DISTRIBUTION_METADATA["License-File"]
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author = "PINA Contributors"
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version = _DISTRIBUTION_METADATA["Version"]
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sys.path.insert(0, os.path.abspath('../sphinx_extensions')) # extension to remove paramref link from lightinig
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sys.path.insert(
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0, os.path.abspath("../sphinx_extensions")
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)
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# -- General configuration ------------------------------------------------
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extensions = [
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'sphinx.ext.autodoc',
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'sphinx.ext.autosummary',
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'sphinx.ext.doctest',
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'sphinx.ext.napoleon',
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'sphinx.ext.intersphinx',
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'sphinx.ext.todo',
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'sphinx.ext.coverage',
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'sphinx.ext.viewcode',
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'sphinx.ext.mathjax',
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'sphinx.ext.intersphinx',
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'paramref_extension', # this extension is made to remove paramref links from lightining doc
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'sphinx_copybutton',
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'sphinx_design'
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"sphinx.ext.autodoc",
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"sphinx.ext.autosummary",
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"sphinx.ext.doctest",
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"sphinx.ext.napoleon",
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"sphinx.ext.intersphinx",
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"sphinx.ext.todo",
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"sphinx.ext.coverage",
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"sphinx.ext.viewcode",
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"sphinx.ext.mathjax",
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"sphinx.ext.intersphinx",
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"paramref_extension", # this extension is made to remove paramref links from lightining doc
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"sphinx_copybutton",
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"sphinx_design",
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]
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# The root document.
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root_doc = 'index'
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# List of patterns, relative to source directory, that match files and
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# directories to ignore when looking for source files.
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# This pattern also affects html_static_path and html_extra_path.
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exclude_patterns = ['_build', 'docstrings', 'nextgen', 'Thumbs.db', '.DS_Store']
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exclude_patterns = ["build", "docstrings", "nextgen", "Thumbs.db", ".DS_Store"]
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# The reST default role (used for this markup: `text`) to use for all documents.
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#default_role = 'literal'
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# default_role = 'literal'
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# Generate the API documentation when building
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autosummary_generate = True
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numpydoc_show_class_members = False
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intersphinx_mapping = {
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'python': ('http://docs.python.org/3', None),
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'matplotlib': ('https://matplotlib.org/stable', None),
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'torch': ('https://pytorch.org/docs/stable/', None),
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'lightning.pytorch': ("https://lightning.ai/docs/pytorch/stable/", None),
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}
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"python": ("http://docs.python.org/3", None),
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"matplotlib": ("https://matplotlib.org/stable", None),
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"torch": ("https://pytorch.org/docs/stable/", None),
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"lightning.pytorch": ("https://lightning.ai/docs/pytorch/stable/", None),
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"torch_geometric": (
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"https://pytorch-geometric.readthedocs.io/en/latest/",
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None,
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),
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}
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nitpicky = True
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nitpick_ignore = [
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# ('py:meth', 'lightning.pytorch.core.module.LightningModule.log'),
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# ('py:meth', 'lightning.pytorch.core.module.LightningModule.log_dict'),
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# ('py:exc', 'MisconfigurationException'),
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# ('py:func', 'torch.inference_mode'),
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# ('py:func', 'torch.no_grad'),
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# ('py:class', 'torch.utils.data.DistributedSampler'),
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# ('py:class', 'pina.model.layers.convolution.BaseContinuousConv'),
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# ('py:class', 'Module'),
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# ('py:class', 'torch.nn.modules.loss._Loss'), # TO FIX
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# ('py:class', 'torch.optim.LRScheduler'), # TO FIX
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]
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# nitpicky = True
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# nitpick_ignore = [
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# ("py:meth", "lightning.pytorch.core.module.LightningModule.log"),
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# ("py:meth", "lightning.pytorch.core.module.LightningModule.log_dict"),
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# ("py:exc", "MisconfigurationException"),
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# ("py:func", "torch.inference_mode"),
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# ("py:func", "torch.no_grad"),
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# ("py:class", "torch.utils.data.DistributedSampler"),
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# ("py:class", "pina.model.layers.convolution.BaseContinuousConv"),
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# ("py:class", "Module"),
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# ("py:class", "torch.nn.modules.loss._Loss"), # TO FIX
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# ("py:class", "torch.optim.LRScheduler"), # TO FIX
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# ]
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# Add any paths that contain templates here, relative to this directory.
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templates_path = ['_templates']
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templates_path = ["_templates"]
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# The suffix(es) of source filenames.
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# You can specify multiple suffix as a list of string:
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# source_suffix = ['.rst', '.md']
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source_suffix = '.rst'
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source_suffix = ".rst"
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# The master toctree document.
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master_doc = 'index'
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master_doc = "index"
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# autoclass
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autoclass_content = 'both'
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autoclass_content = "both"
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# The version info for the project you're documenting, acts as replacement for
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# |version| and |release|, also used in various other places throughout the
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@@ -108,7 +108,7 @@ release = version
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#
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# This is also used if you do content translation via gettext catalogs.
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# Usually you set "language" from the command line for these cases.
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language = 'en'
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language = "en"
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# List of patterns, relative to source directory, that match files and
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# directories to ignore when looking for source files.
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@@ -122,7 +122,7 @@ add_function_parentheses = True
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add_module_names = False
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# The name of the Pygments (syntax highlighting) style to use.
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pygments_style = 'sphinx'
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pygments_style = "sphinx"
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# A list of ignored prefixes for module index sortins as "systems = False
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@@ -143,7 +143,7 @@ viewcode_import = True
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# The theme to use for HTML and HTML Help pages. See the documentation for
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# a list of builtin themes.
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html_theme = 'pydata_sphinx_theme'
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html_theme = "pydata_sphinx_theme"
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# Theme options are theme-specific and customize the look and feel of a theme
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# further. For a list of options available for each theme, see the
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@@ -151,7 +151,7 @@ html_theme = 'pydata_sphinx_theme'
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# html_theme_options = {}
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# Add any paths that contain custom themes here, relative to this directory.
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html_theme_path = [sphinx_rtd_theme.get_html_theme_path()]
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# html_theme_path = [sphinx_rtd_theme.get_html_theme_path()]
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# The name of an image file (relative to this directory) to place at the top
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# of the sidebar.
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@@ -162,7 +162,7 @@ html_theme_options = {
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"name": "GitHub",
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"url": "https://github.com/mathLab/PINA",
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"icon": "fab fa-github",
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"type": "fontawesome",
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"type": "fontawesome",
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},
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{
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"name": "Twitter",
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@@ -172,7 +172,7 @@ html_theme_options = {
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},
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{
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"name": "Email",
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"url": "mailto:pina.mathlab@gmail.com",
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"url": "mailto:pina.mathlab@gmail.com",
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"icon": "fas fa-envelope",
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"type": "fontawesome",
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},
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@@ -185,7 +185,7 @@ html_theme_options = {
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# If not ''i, a 'Last updated on:' timestamp is inserted at every page bottom,
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# using the given strftime format.
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html_last_updated_fmt = '%b %d, %Y'
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html_last_updated_fmt = "%b %d, %Y"
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# If false, no index is generated.
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html_use_index = True
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@@ -197,40 +197,52 @@ html_show_sourcelink = True
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html_show_copyright = True
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# Output file base name for HTML help builder.
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htmlhelp_basename = 'pinadoc'
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htmlhelp_basename = "pinadoc"
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# Link to external html files
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html_extra_path = ["tutorials"]
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# Avoid side bar for html files
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html_sidebars = {
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"_tutorial": [],
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"_team": [],
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"_cite": [],
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"_contributing": [],
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"_installation": [],
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"_LICENSE": [],
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}
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# -- Options for LaTeX output ---------------------------------------------
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latex_elements = {
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# The paper size ('letterpaper' or 'a4paper').
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'papersize': 'a4paper',
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"papersize": "a4paper",
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# The font size ('10pt', '11pt' or '12pt').
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'pointsize': '20pt',
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"pointsize": "20pt",
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# Additional stuff for the LaTeX preamble.
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'preamble': '',
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"preamble": "",
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# Latex figure (float) alignment
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'figure_align': 'htbp',
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"figure_align": "htbp",
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}
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# Grouping the document tree into LaTeX files. List of tuples
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# (source start file, target name, title,
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# author, documentclass [howto, manual, or own class]).
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latex_documents = [
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(master_doc, 'pina.tex', u'PINA Documentation',
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u'PINA contributors', 'manual'),
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(
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master_doc,
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"pina.tex",
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"PINA Documentation",
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"PINA contributors",
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"manual",
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),
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]
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# -- Options for manual page output ---------------------------------------
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# One entry per manual page. List of tuples
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# (source start file, name, description, authors, manual section).
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man_pages = [
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(master_doc, 'pina', u'PINA Documentation',
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[author], 1)
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]
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man_pages = [(master_doc, "pina", "PINA Documentation", [author], 1)]
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# -- Options for Texinfo output -------------------------------------------
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@@ -238,11 +250,20 @@ man_pages = [
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# (source start file, target name, title, author,
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# dir menu entry, description, category)
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texinfo_documents = [
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(master_doc, 'pina', u'PINA Documentation',
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author, 'pina', 'One line description of project.',
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'Miscellaneous'),
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(
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master_doc,
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"pina",
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"PINA Documentation",
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author,
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"pina",
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"One line description of project.",
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"Miscellaneous",
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),
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]
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# If true, do not generate a @detailmenu in the "Top" node's menu.
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# texinfo_no_detailmenu = False
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autodoc_member_order = 'bysource'
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autodoc_member_order = "bysource"
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# Do consider meth ending with _ (needed for in-place methods of torch)
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strip_signature_backslash = True
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