Format Python code with psf/black push (#325)

* 🎨 Format Python code with psf/black

pina/callbacks/__init__.py

@@ -2,8 +2,8 @@ __all__ = [
     "SwitchOptimizer",
     "R3Refinement",
     "MetricTracker",
-    "PINAProgressBar"
-    ]
+    "PINAProgressBar",
+]
 
 from .optimizer_callbacks import SwitchOptimizer
 from .adaptive_refinment_callbacks import R3Refinement

pina/callbacks/processing_callbacks.py

@@ -6,9 +6,12 @@ import torch
 import copy
 
 from pytorch_lightning.callbacks import Callback, TQDMProgressBar
-from lightning.pytorch.callbacks.progress.progress_bar import get_standard_metrics
+from lightning.pytorch.callbacks.progress.progress_bar import (
+    get_standard_metrics,
+)
 from pina.utils import check_consistency
 
+
 class MetricTracker(Callback):
 
     def __init__(self):
@@ -37,7 +40,7 @@ class MetricTracker(Callback):
 
     def on_train_epoch_end(self, trainer, pl_module):
         """
-        Collect and track metrics at the end of each training epoch. 
+        Collect and track metrics at the end of each training epoch.
 
         :param trainer: The trainer object managing the training process.
         :type trainer: pytorch_lightning.Trainer
@@ -68,7 +71,8 @@ class MetricTracker(Callback):
 class PINAProgressBar(TQDMProgressBar):
 
     BAR_FORMAT = "{l_bar}{bar}| {n_fmt}/{total_fmt} [{elapsed}<{remaining}, {rate_noinv_fmt}{postfix}]"
-    def __init__(self, metrics='mean', **kwargs):
+
+    def __init__(self, metrics="mean", **kwargs):
         """
         PINA Implementation of a Lightning Callback for enriching the progress
         bar.
@@ -123,7 +127,7 @@ class PINAProgressBar(TQDMProgressBar):
         if pbar_metrics:
             pbar_metrics = {
                 key: pbar_metrics[key] for key in self._sorted_metrics
-                }
+            }
         duplicates = list(standard_metrics.keys() & pbar_metrics.keys())
         if duplicates:
             rank_zero_warn(
@@ -133,7 +137,7 @@ class PINAProgressBar(TQDMProgressBar):
             )
 
         return {**standard_metrics, **pbar_metrics}
-    
+
     def on_fit_start(self, trainer, pl_module):
         """
         Check that the metrics defined in the initialization are available,
@@ -145,9 +149,13 @@ class PINAProgressBar(TQDMProgressBar):
         """
         # Check if all keys in sort_keys are present in the dictionary
         for key in self._sorted_metrics:
-            if key not in trainer.solver.problem.conditions.keys() and key != 'mean':
+            if (
+                key not in trainer.solver.problem.conditions.keys()
+                and key != "mean"
+            ):
                 raise KeyError(f"Key '{key}' is not present in the dictionary")
         # add the loss pedix
         self._sorted_metrics = [
-            metric + '_loss' for metric in self._sorted_metrics]
-        return super().on_fit_start(trainer, pl_module)
+            metric + "_loss" for metric in self._sorted_metrics
+        ]
+        return super().on_fit_start(trainer, pl_module)

pina/model/layers/__init__.py

@@ -13,7 +13,7 @@ __all__ = [
     "FourierFeatureEmbedding",
     "AVNOBlock",
     "LowRankBlock",
-    "RBFBlock"
+    "RBFBlock",
 ]
 
 from .convolution_2d import ContinuousConvBlock

pina/model/layers/rbf_layer.py

@@ -6,65 +6,74 @@ from itertools import combinations_with_replacement
 import torch
 from ...utils import check_consistency
 
+
 def linear(r):
-    '''
+    """
     Linear radial basis function.
-    '''
+    """
     return -r
 
+
 def thin_plate_spline(r, eps=1e-7):
-    '''
+    """
     Thin plate spline radial basis function.
-    '''
+    """
     r = torch.clamp(r, min=eps)
     return r**2 * torch.log(r)
 
+
 def cubic(r):
-    '''
+    """
     Cubic radial basis function.
-    '''
+    """
     return r**3
 
+
 def quintic(r):
-    '''
+    """
     Quintic radial basis function.
-    '''
-    return -r**5
+    """
+    return -(r**5)
+
 
 def multiquadric(r):
-    '''
+    """
     Multiquadric radial basis function.
-    '''
+    """
     return -torch.sqrt(r**2 + 1)
 
+
 def inverse_multiquadric(r):
-    '''
+    """
     Inverse multiquadric radial basis function.
-    '''
-    return 1/torch.sqrt(r**2 + 1)
+    """
+    return 1 / torch.sqrt(r**2 + 1)
+
 
 def inverse_quadratic(r):
-    '''
+    """
     Inverse quadratic radial basis function.
-    '''
-    return 1/(r**2 + 1)
+    """
+    return 1 / (r**2 + 1)
+
 
 def gaussian(r):
-    '''
+    """
     Gaussian radial basis function.
-    '''
-    return torch.exp(-r**2)
+    """
+    return torch.exp(-(r**2))
+
 
 radial_functions = {
-   "linear": linear,
-   "thin_plate_spline": thin_plate_spline,
-   "cubic": cubic,
-   "quintic": quintic,
-   "multiquadric": multiquadric,
-   "inverse_multiquadric": inverse_multiquadric,
-   "inverse_quadratic": inverse_quadratic,
-   "gaussian": gaussian
-   }
+    "linear": linear,
+    "thin_plate_spline": thin_plate_spline,
+    "cubic": cubic,
+    "quintic": quintic,
+    "multiquadric": multiquadric,
+    "inverse_multiquadric": inverse_multiquadric,
+    "inverse_quadratic": inverse_quadratic,
+    "gaussian": gaussian,
+}
 
 scale_invariant = {"linear", "thin_plate_spline", "cubic", "quintic"}
 
@@ -73,8 +82,8 @@ min_degree_funcs = {
     "linear": 0,
     "thin_plate_spline": 1,
     "cubic": 1,
-    "quintic": 2
-    }
+    "quintic": 2,
+}
 
 
 class RBFBlock(torch.nn.Module):
@@ -88,6 +97,7 @@ class RBFBlock(torch.nn.Module):
         it is inspired from the implementation in `torchrbf.
         <https://github.com/ArmanMaesumi/torchrbf>`_
     """
+
     def __init__(
         self,
         neighbors=None,
@@ -207,7 +217,8 @@ class RBFBlock(torch.nn.Module):
             if value < min_degree:
                 warnings.warn(
                     "`degree` is too small for this kernel. Setting to "
-                    f"{min_degree}.", UserWarning,
+                    f"{min_degree}.",
+                    UserWarning,
                 )
         self._degree = value
 
@@ -222,8 +233,9 @@ class RBFBlock(torch.nn.Module):
             )
 
         if isinstance(self.smoothing, (int, float)):
-            self.smoothing = torch.full((y.shape[0],), self.smoothing
-                    ).float().to(y.device)
+            self.smoothing = (
+                torch.full((y.shape[0],), self.smoothing).float().to(y.device)
+            )
 
     def fit(self, y, d):
         """
@@ -243,15 +255,22 @@ class RBFBlock(torch.nn.Module):
             raise NotImplementedError("neighbors currently not supported")
 
         powers = RBFBlock.monomial_powers(self.y.shape[1], self.degree).to(
-                y.device)
+            y.device
+        )
         if powers.shape[0] > nobs:
-            raise ValueError("The data is not compatible with the "
-                "requested degree.")
+            raise ValueError(
+                "The data is not compatible with the requested degree."
+            )
 
         if self.neighbors is None:
-            self._shift, self._scale, self._coeffs = RBFBlock.solve(self.y,
-                    self.d.reshape((self.y.shape[0], -1)),
-                    self.smoothing, self.kernel, self.epsilon, powers)
+            self._shift, self._scale, self._coeffs = RBFBlock.solve(
+                self.y,
+                self.d.reshape((self.y.shape[0], -1)),
+                self.smoothing,
+                self.kernel,
+                self.epsilon,
+                powers,
+            )
 
         self.powers = powers
 
@@ -411,8 +430,9 @@ class RBFBlock(torch.nn.Module):
             of the interpolator
         """
 
-        lhs, rhs, shift, scale = RBFBlock.build(y, d, smoothing, kernel,
-                epsilon, powers)
+        lhs, rhs, shift, scale = RBFBlock.build(
+            y, d, smoothing, kernel, epsilon, powers
+        )
         try:
             coeffs = torch.linalg.solve(lhs, rhs)
         except RuntimeError as e:

pina/problem/abstract_problem.py

@@ -196,9 +196,10 @@ class AbstractProblem(metaclass=ABCMeta):
 
         # check consistency location
         locations_to_sample = [
-                condition for condition in self.conditions
-                if hasattr(self.conditions[condition], 'location')
-                ]
+            condition
+            for condition in self.conditions
+            if hasattr(self.conditions[condition], "location")
+        ]
         if locations == "all":
             # only locations that can be sampled
             locations = locations_to_sample