partially fix documentation (#80)

docs/source/_rst/abstractproblem.rst

@@ -0,0 +1,12 @@
+AbstractProblem
+===========
+.. currentmodule:: pina.problem.abstract_problem
+
+.. automodule:: pina.problem.abstract_problem
+
+.. autoclass:: AbstractProblem
+    :members:
+    :private-members:
+    :undoc-members:
+    :show-inheritance:
+    :noindex:

docs/source/_rst/code.rst

@@ -10,5 +10,9 @@ Code Documentation
     FeedForward <fnn.rst>
     DeepONet <deeponet.rst>
     ContinuousConv <convolution.rst>
+    MultiFeedForward <multifeedforward.rst>
+    AbstractProblem <abstractproblem.rst>
+    SpatialProblem <spatialproblem.rst>
+    TimeDependentProblem <timedepproblem.rst>
     Operators <operators.rst>
-    Plotter <plotter.rst>
+    Plotter <plotter.rst>

docs/source/_rst/multifeedforward.rst

@@ -0,0 +1,12 @@
+MultiFeedForward
+===========
+.. currentmodule:: pina.model.multi_feed_forward
+
+.. automodule:: pina.model.multi_feed_forward
+
+.. autoclass:: MultiFeedForward
+    :members:
+    :private-members:
+    :undoc-members:
+    :show-inheritance:
+    :noindex:

docs/source/_rst/parametricproblem.rst

@@ -0,0 +1,12 @@
+ParametricProblem
+===========
+.. currentmodule:: pina.problem.parametric_problem
+
+.. automodule:: pina.problem.parametric_problem
+
+.. autoclass:: ParametricProblem
+    :members:
+    :private-members:
+    :undoc-members:
+    :show-inheritance:
+    :noindex:

docs/source/_rst/spatialproblem.rst

@@ -0,0 +1,12 @@
+SpatialProblem
+===========
+.. currentmodule:: pina.problem.spatial_problem
+
+.. automodule:: pina.problem.spatial_problem
+
+.. autoclass:: SpatialProblem
+    :members:
+    :private-members:
+    :undoc-members:
+    :show-inheritance:
+    :noindex:

docs/source/_rst/timedepproblem.rst

@@ -0,0 +1,12 @@
+TimeDependentProblem
+===========
+.. currentmodule:: pina.problem.timedep_problem
+
+.. automodule:: pina.problem.timedep_problem
+
+.. autoclass:: TimeDependentProblem
+    :members:
+    :private-members:
+    :undoc-members:
+    :show-inheritance:
+    :noindex:

pina/model/multi_feed_forward.py

@@ -1,13 +1,16 @@
+"""Module for Multi FeedForward model"""
 import torch
 
 from .feed_forward import FeedForward
 
 
 class MultiFeedForward(torch.nn.Module):
-
+    """
+    :param dict dff_dict: dictionary of FeedForward networks.
+    """
     def __init__(self, dff_dict):
-        '''
+        """
-        '''
+        """
         super().__init__()
 
         if not isinstance(dff_dict, dict):

pina/problem/abstract_problem.py

@@ -1,10 +1,26 @@
+""" Module for AbstractProblem class """
 from abc import ABCMeta, abstractmethod
 
 
 class AbstractProblem(metaclass=ABCMeta):
+    """
+    The abstract `AbstractProblem` class. All the class defining a PINA Problem
+    should be inheritied from this class.
 
+    In the definition of a PINA problem, the fundamental elements are:
+    the output variables, the condition(s), and the domain(s) where the
+    conditions are applied.
+    """
     @property
     def input_variables(self):
+        """
+        The input variables of the AbstractProblem, whose type depends on the
+        type of domain (spatial, temporal, and parameter).
+
+        :return: the input variables of self
+        :rtype: list
+
+        """
         variables = []
 
         if hasattr(self, 'spatial_variables'):
@@ -20,7 +36,13 @@ class AbstractProblem(metaclass=ABCMeta):
 
     @property
     def domain(self):
+        """
+        The domain(s) where the conditions of the AbstractProblem are valid.
 
+        :return: the domain(s) of self
+        :rtype: list (if more than one domain are defined),
+            `Span` domain (of only one domain is defined)
+        """
         domains = [
             getattr(self, f'{t}_domain')
             for t in ['spatial', 'temporal', 'parameter']
@@ -46,9 +68,15 @@ class AbstractProblem(metaclass=ABCMeta):
     @property
     @abstractmethod
     def output_variables(self):
+        """
+        The output variables of the problem.
+        """
         pass
 
     @property
     @abstractmethod
     def conditions(self):
+        """
+        The conditions of the problem.
+        """
         pass

pina/problem/parametric_problem.py

@@ -1,9 +1,45 @@
+"""Module for the ParametricProblem class"""
 from abc import abstractmethod
 
 from .abstract_problem import AbstractProblem
 
 
 class ParametricProblem(AbstractProblem):
+    """
+    The class for the definition of parametric problems, i.e., problems
+    with parameters among the input variables.
+
+    Here's an example of a spatial parametric ODE problem, i.e., a spatial
+    ODE problem with an additional parameter `alpha` as coefficient of the
+    derivative term.
+
+    :Example:
+        >>> from pina.problem import SpatialProblem, ParametricProblem
+        >>> from pina.operators import grad
+        >>> from pina import Condition, Span
+        >>> import torch
+
+        >>> class ParametricODE(SpatialProblem, ParametricProblem):
+
+        >>>     output_variables = ['u']
+        >>>     spatial_domain = Span({'x': [0, 1]})
+        >>>     parameter_domain = Span({'alpha': {1, 10}})
+
+        >>>     def ode_equation(input_, output_):
+        >>>         u_x = grad(output_, input_, components=['u'], d=['x'])
+        >>>         u = output_.extract(['u'])
+        >>>         alpha = input_.extract(['alpha'])
+        >>>         return alpha * u_x - u
+
+        >>>     def initial_condition(input_, output_):
+        >>>         value = 1.0
+        >>>         u = output_.extract(['u'])
+        >>>         return u - value
+
+        >>>     conditions = {
+        >>>         'x0': Condition(Span({'x': 0, 'alpha':[1, 10]}), initial_condition),
+        >>>         'D': Condition(Span({'x': [0, 1], 'alpha':[1, 10]}), ode_equation)}
+    """
 
     @abstractmethod
     def parameter_domain(self):

pina/problem/spatial_problem.py

@@ -1,14 +1,53 @@
+"""Module for the SpatialProblem class"""
 from abc import abstractmethod
 
 from .abstract_problem import AbstractProblem
 
 
 class SpatialProblem(AbstractProblem):
+    """
+    The class for the definition of spatial problems, i.e., for problems
+    with spatial input variables.
+
+    Here's an example of a spatial 1-dimensional ODE problem.
+
+    :Example:
+        >>> from pina.problem import SpatialProblem
+        >>> from pina.operators import grad
+        >>> from pina import Condition, Span
+        >>> import torch
+
+        >>> class SimpleODE(SpatialProblem):
+
+        >>>     output_variables = ['u']
+        >>>     spatial_domain = Span({'x': [0, 1]})
+
+        >>>     def ode_equation(input_, output_):
+        >>>         u_x = grad(output_, input_, components=['u'], d=['x'])
+        >>>         u = output_.extract(['u'])
+        >>>         return u_x - u
+
+        >>>     def initial_condition(input_, output_):
+        >>>         value = 1.0
+        >>>         u = output_.extract(['u'])
+        >>>         return u - value
+
+        >>>     conditions = {
+        >>>         'x0': Condition(Span({'x': 0.}), initial_condition),
+        >>>         'D': Condition(Span({'x': [0, 1]}), ode_equation)}
+
+    """
 
     @abstractmethod
     def spatial_domain(self):
+        """
+        The spatial domain of the problem.
+        """
         pass
 
     @property
     def spatial_variables(self):
+        """
+        The spatial input variables of the problem.
+        """
         return self.spatial_domain.variables

pina/problem/timedep_problem.py

@@ -1,14 +1,62 @@
+"""Module for the TimeDependentProblem class"""
 from abc import abstractmethod
 
 from .abstract_problem import AbstractProblem
 
 
 class TimeDependentProblem(AbstractProblem):
+    """
+    The class for the definition of time-dependent problems, i.e., for problems
+    depending on time.
+
+    Here's an example of a 1D wave problem.
+
+    :Example:
+        >>> from pina.problem import SpatialProblem, TimeDependentProblem
+        >>> from pina.operators import grad, nabla
+        >>> from pina import Condition, Span
+        >>> import torch
+
+        >>> class Wave(TimeDependentSpatialProblem):
+
+        >>>     output_variables = ['u']
+        >>>     spatial_domain = Span({'x': [0, 3]})
+        >>>     temporal_domain = Span({'t': [0, 1]})
+
+        >>>     def wave_equation(input_, output_):
+        >>>         u_t = grad(output_, input_, components=['u'], d=['t'])
+        >>>         u_tt = grad(u_t, input_, components=['dudt'], d=['t'])
+        >>>         nabla_u = nabla(output_, input_, components=['u'], d=['x'])
+        >>>         return nabla_u - u_tt
+
+        >>>     def nil_dirichlet(input_, output_):
+        >>>         value = 0.0
+        >>>         return output_.extract(['u']) - value
+
+        >>>     def initial_condition(input_, output_):
+        >>>         u_expected = (-3*torch.sin(2*torch.pi*input_.extract(['x']))
+        >>>             + 5*torch.sin(8/3*torch.pi*input_.extract(['x'])))
+        >>>         u = output_.extract(['u'])
+        >>>         return u - u_expected
+
+        >>>     conditions = {
+        >>>         't0': Condition(Span({'x': [0, 3], 't':0}), initial_condition),
+        >>>         'gamma1': Condition(Span({'x':0, 't':[0, 1]}), nil_dirichlet),
+        >>>         'gamma2': Condition(Span({'x':3, 't':[0, 1]}), nil_dirichlet),
+        >>>         'D': Condition(Span({'x': [0, 3], 't':[0, 1]}), wave_equation)}
+
+    """
 
     @abstractmethod
     def temporal_domain(self):
+        """
+        The temporal domain of the problem.
+        """
         pass
 
     @property
     def temporal_variable(self):
+        """
+        The time variable of the problem.
+        """
         return self.temporal_domain.variables